rs31206855 SNP Detail

Summary

• ID
  rs31206855
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152337319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CATTACTCC TCTGGGTACC TTTCCTGGTC
  TGTCTGACAA AGGATAAGGA CTCTGAGGAA TTCTCACTTT CCATTTGGAT CTGATGGAGC
  TCGCAAGTTT ACGCGAAGAG CCAGAGAGCC TCAGCTTGTC CTGAAGGGAT GCACACGTGT
  S
  CTGTGCTTTC AATTGGATGT CTTTGTATTC TTATGGTGAA TATGAATGAA TCTCGTGGTG
  GAACATGCCC CTCACTGGTA CATTATCTTG CAGGACTATG AAAAAAGAAC CATTAACGCA
  CGCCTCATGT CTCCTCCAGG AAACCGCACC                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J
ss45163551	mCV23114680	ABI	CRAMUS_MOUSE	f	SNP	G	C					C	C
ss49713785	NES13062984	PERLEGEN	MM_PANEL2	f	SNP		C	G	C	G	C		C	C	G		G
ss145731329	ENSMUSSNP6488183	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss320065965	CHEV_1_154308698	CHEVERUD	SCREENING_POP	f	SNP											C		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J
rs31206855					SNP	G	C	G	C	G	C	C	C	C	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49713785	NES13062984	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152337319 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Colgalt2	collagen beta(1-O)galactosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420465	regulatory region 420465			211 bp proximal
Rr420466	regulatory region 420466			859 bp proximal