rs31206860 SNP Detail

Summary

• ID
  rs31206860
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152336986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTCTAAAG GCCCAGAGTC TTATGCAATC
  ACATTGGCCC CAAGTCCCAC CTTCTGACTG GATTCCAGAG GAACATTTGG ACCACAGCAC
  CATGTTTGTG TTTCCGTGGA CAGTGTCTGG TTTAGTGGCC ACAGATGATC TGTGGAACAC
  Y
  TGTCCAGGCG TCCAGCTATC TGCTGTGCCA TGATGGGTTT GTGGTGTCAT TTGCTTGGCA
  CACATTTAtt ttcttgatgc tggggattca atccagagct gtgtatatgc tatggaagta
  ttctaccatt gagccacatc ccaacccACA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss49713790	NES13063029	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	T	T	C		C		T	C	C
ss145731322	ENSMUSSNP260898	ENSEMBL	ENSEMBL_Sanger	f	SNP	T					T					C
ss320065959	CHEV_1_154308365	CHEVERUD	SCREENING_POP	f	SNP									T						C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs31206860					SNP	T	C	T	C	T	T	T	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49713790	NES13063029	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152336986 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Colgalt2	collagen beta(1-O)galactosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420464	regulatory region 420464			1907 bp distal
Rr420465	regulatory region 420465			544 bp proximal
Rr420466	regulatory region 420466			1192 bp proximal