rs31206861 SNP Detail

Summary

• ID
  rs31206861
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152336906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATCAAGT TGCTGGTAGA
  GCTGGTGTCA GATAAGGGCT CCACCTCTGC CTCACAGTTG GTAGCTTGTT GCTGCTCCCT
  CAAATAGCAG GAGGAGCCCA TAAGGCTTGC CCACCCTCTC GAGTGAACAG CCTTCTAAAG
  GCCCAGAGTC TTATGCAATC ACATTGGCCC CAAGTCCCAC CTTCTGACTG GATTCCAGAG
  R
  AACATTTGGA CCACAGCACC ATGTTTGTGT TTCCGTGGAC AGTGTCTGGT TTAGTGGCCA
  CAGATGATCT GTGGAACACT TGTCCAGGCG TCCAGCTATC TGCTGTGCCA TGATGGGTTT
  GTGGTGTCAT TTGCTTGGCA CACATTTATT TTCTTGATGC TGGGGATTCA ATCCAGAGCT
  GTGTATATGC TATGGAAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49713791	NES13063028	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31206861					SNP	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49713791	NES13063028	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152336906 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Colgalt2	collagen beta(1-O)galactosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420464	regulatory region 420464			1827 bp distal
Rr420465	regulatory region 420465			624 bp proximal
Rr420466	regulatory region 420466			1272 bp proximal