rs31207469 SNP Detail

Summary

• ID
  rs31207469
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146166486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAAGAAA GAAAGAAAGA
  AAGAAAGAAA GAAAGAAAGA AAGAAAGGAA GGAAGGAAGG AAACATGAAG AACTCTGGAT
  GTGGTAAAGA AGATTAGGAG TAGCAATAGA CACGTCTATT CCAGAGTCAT AGAATTGTTG
  TTTCACAATC TGGTAAAAAT AAACCATTTT TTTACATAAA AAACTTGAAG TACAAATTAT
  Y
  TTTAAAAGTC TCTTTGAATG ATGTCACTTT ACGGCGTATA GAAATCCTCA TTATTTGTTG
  CCTTTATAGT ATTGACTGAT GACCTGATAT TGTTTATAGA AAATTGATTG CAAACACGTT
  ACTACACAAA TACAGCATTA AGCACTCTGG ACTTCAGAAT CAAAATTAAA TGCCTAATAG
  TTAAACTTGG GTACATTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	SM/J
ss47027578	NES10840187	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C	C	C	C
ss321010482	CHEV_3_146123695	CHEVERUD	SCREENING_POP	f	SNP								T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	SM/J
rs31207469					SNP	C	T	T	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47027578	NES10840187	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146166486 () rs orientation: forward

Symbol	Name	Function Class
Ctbs	chitobiase	Intron
Rr587031	regulatory region 587031	1404 bp distal
Spata1	spermatogenesis associated 1	Intron