rs31207471 SNP Detail

Summary

• ID
  rs31207471
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146166576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTAGGAG TAGCAATAGA
  CACGTCTATT CCAGAGTCAT AGAATTGTTG TTTCACAATC TGGTAAAAAT AAACCATTTT
  TTTACATAAA AAACTTGAAG TACAAATTAT CTTTAAAAGT CTCTTTGAAT GATGTCACTT
  TACGGCGTAT AGAAATCCTC ATTATTTGTT GCCTTTATAG TATTGACTGA TGACCTGATA
  Y
  TGTTTATAGA AAATTGATTG CAAACACGTT ACTACACAAA TACAGCATTA AGCACTCTGG
  ACTTCAGAAT CAAAATTAAA TGCCTAATAG TTAAACTTGG GTACATTATA ATCCTATCAT
  ATATATGTAT GTATGTAATA TTGTTTATAT CGTGTACTGG CTAGTTTTGT GTCAACTTGA
  CACAGGTTGG ACTTATCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
ss47027580	NES10840189	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
rs31207471					SNP	T	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47027580	NES10840189	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146166576 () rs orientation: forward

Symbol	Name	Function Class
Ctbs	chitobiase	Intron
Rr587031	regulatory region 587031	1494 bp distal
Spata1	spermatogenesis associated 1	Intron