rs31207673 SNP Detail

Summary

• ID
  rs31207673
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:67469773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGT AAGGCACCCA CACACTATCT
  Y
  CCAGCAGGGC ACCGCCACCC CTGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39265586	mCV25264744	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss139643648	ENSMUSSNP3986667	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss324659621	CHEV_14_67851161	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31207673					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:67469773 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6656	CpG island 6656	1652 bp distal
Cpgi6657	CpG island 6657	69 bp distal
Cpgi6658	CpG island 6658	893 bp proximal
Cpgi6659	CpG island 6659	1857 bp proximal
Ebf2	early B cell factor 2	968 bp upstream
Gm20675	predicted gene 20675	within coordinates
Gm63531	predicted gene, 63531	1414 bp downstream
Rr297417	regulatory region 297417	1772 bp distal
Rr297418	regulatory region 297418	within coordinates
Tssr126327	transcription start site region 126327	858 bp upstream
Tssr126328	transcription start site region 126328	962 bp upstream
Tssr126329	transcription start site region 126329	1111 bp upstream
Tssr126330	transcription start site region 126330	1578 bp upstream