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rs31207715 SNP Detail
Summary
  • ID
    rs31207715
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr1:152336456 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                      ttcagttgc ctgcaggttc ctgacctgac
    tttcctcaat gatgaagtgt cgcctgagta ttacaagctg aaataagtcc tttcctcccc
    aagttgctct tagtcatggc atttactata acaatagaaa cTAAGACAGT GGCCTTCAAA
    M
    CCCAAACTCT GATCTTAAAA AAAAATAATA ATCAGTAAAG CTCAATCATA GTTTTTCAGT
    GTTAGCTCAG AAAGGTCTGA GCTCCCCTTT CACCCGAGTG TAATTCAGAG AGACCGTGGG
    ACAGAGATAA ATGATCAAGA ACCCGCTTTT                                 
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss49713795 NES13063045 PERLEGEN MM_PANEL2 f SNP A C A C A A A A C C A C C A
ss320065953 CHEV_1_154307835 CHEVERUD SCREENING_POP f SNP A C
SNP Consensus Information
SNP Consensus Type
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs31207715 SNP A C A C A A A A C A C A C C C A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss49713795 NES13063045 PERLEGEN MM_PANEL f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:152336456 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Colgalt2 collagen beta(1-O)galactosyltransferase 2 Intron
Noncoding-Transcript-Variant
Rr420464 regulatory region 420464 1377 bp distal
Rr420465 regulatory region 420465 1074 bp proximal
Rr420466 regulatory region 420466 1722 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory