rs31207727 SNP Detail

Summary

• ID
  rs31207727
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:110684575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCCCTGA TGCACAGGGC
  TGTGTCTCTC CGAACAGTGC TCCTCTGTGC ACCTGCCTGG GAGCTCTGAA CTTCACACAC
  ACCCCTGCCC GCCTCCTCTG TTCTCAAACC CCACCCCTCC CCATCCCCCA TCTCCAAGCT
  CTCCAATCCG GGACTTCCAT ACCCAACCGC TAGGCTCAAA GCCAAAAAGC CAGAAGCAAT
  Y
  AAGCCTAAAT ATAGGTGTGT TTTGGTAAGA AGTACAGGCC CTGTCTTTTC CTCTTGGTAA
  ATCAATCGCA GGAAAAAAAA AAAAAAAGAA AGAAAGAAAG AAAGAAAGAA AAGAAAGGAA
  AAGAGAAGAA AAGAAAAGAA AAGAAAAAGA AAAGAAAAAG CAAGTCTAGA AAGAAACCTG
  TTAGCCAGCC TCTGGCTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47528737	NES11188087	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31207727					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47528737	NES11188087	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:110684575 () rs orientation: forward

Symbol	Name	Function Class
Marveld3	MARVEL (membrane-associating) domain containing 3	within coordinates
Rr173817	regulatory region 173817	within coordinates
Rr401124	regulatory region 401124	530 bp downstream
Rr401125	regulatory region 401125	within coordinates