rs31209062 SNP Detail

Summary

• ID
  rs31209062
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47449838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCC CAGTGCTGTG ACTAGGTAAC
  M
  CACCTGCTTC TCTGTCATCC CCTTA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45008118	mCV24590665	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	C	A
ss146465851	ENSMUSSNP1449982	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31209062					SNP	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47449838 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11031	CpG island 11031	2000 bp proximal
Gm52384	predicted gene, 52384	1676 bp downstream
Rr549061	regulatory region 549061	455 bp distal
Rr549062	regulatory region 549062	545 bp distal
Rr549063	regulatory region 549063	42 bp proximal
Rr549064	regulatory region 549064	631 bp proximal
Rr549065	regulatory region 549065	1768 bp proximal
Sh3pxd2a	SH3 and PX domains 2A	within coordinates
Tssr159729	transcription start site region 159729	776 bp upstream
Tssr159730	transcription start site region 159730	632 bp upstream