rs31209688 SNP Detail

Summary

• ID
  rs31209688
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135501862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCT ACCTTGCAGG CCGCAATGGT
  R
  TATCTCACTT ATGTGTGTCT GGAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45007768	mCV25327093	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	A
ss145538294	ENSMUSSNP4107450	ENSEMBL	ENSEMBL_Sanger	f	SNP			G		A
ss319991191	CHEV_1_137470701	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31209688					SNP	A	A	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135501862 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nav1	neuron navigator 1			Intron
				Noncoding-Transcript-Variant
Rr419191	regulatory region 419191			1646 bp distal
Rr419192	regulatory region 419192			1313 bp distal
Rr419193	regulatory region 419193			266 bp proximal
Rr419194	regulatory region 419194			1356 bp proximal