rs31209994 SNP Detail

Summary

• ID
  rs31209994
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78870297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGCCTGAG CTTCATAGCA
  AAGTCCTGTC TCTAGAAAAC AACAACTACT GACAGCCACA GTAGTTCCTG TGTGGCCATT
  TGTTACAGCG ACCACAGTAA GCTTTACGTT ATTCAGGAAT GTAACCTAGA GGCCGAGGGA
  GAAACCATGT GCGCCTTGTC TGCCTGGAAA ATTTGAGATT ATGCTGTGTG AGCAAGATTA
  Y
  GGAAAACAGG CATCCTCACA CATTACAAGA GGCAGTTAAG TCAGTGTGAT TCCTATGACA
  GCTAATTTTT AAATATATAT ATATATCAAG ATTTTAAATC ACAGCCCTGT CAGCTATCAA
  GTCTATTTAT AACTTATCTG GAGATACATT CACTAGCAAG AATAGGCTAA CACGCACGGA
  AGCATGGTTT GTAACAATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47028467	NES10759190	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C	C	C	C	C	C	C	C	T
ss60421452	NES15922995	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31209994					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47028467	NES10759190	PERLEGEN	MM_PANEL	f	SNP	C/T
ss60421452	NES15922995	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78870297 () rs orientation: forward

Symbol	Name	Function Class
Gm65474	predicted gene, 65474	within coordinates
Rr578452	regulatory region 578452	1406 bp proximal