rs31210384 SNP Detail

Summary

• ID
  rs31210384
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:187993986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTAAGTAAT CAAACACAGT TAGAGCAGGA TGTCCTGAGG
  TGAACAAAGC CAAAGAGAAA ATTCCATCAA TTGGCCAGCC TCATGCTGGC TCCTTCCTCC
  Y
  AAAGAGGGAA CATGCAGAAC TGCAGAACGA CCCATATAGT TGCTGTCTTA TAGAATCAGG
  CCTTTGTGAT TAAAGCATCG CATGGAGTAA GATTCATAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45007774	mCV23594119	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	T
ss146472088	ENSMUSSNP5082434	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		T
ss320187306	CHEV_1_190085668	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31210384					SNP	T	T	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:187993986 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1191	CpG island 1191	1428 bp proximal
Rr425684	regulatory region 425684	840 bp distal
Rr425685	regulatory region 425685	1078 bp distal
Tssr368	transcription start site region 368	1110 bp upstream
Tssr10680	transcription start site region 10680	192 bp upstream
Tssr10681	transcription start site region 10681	228 bp upstream
Ush2a	usherin	1049 bp upstream