rs31211575 SNP Detail

Summary

• ID
  rs31211575
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:9149440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                TTCATTTA CATTTCCAAT
  GCTATCCCAA AAGTCCCCCA CACCCTCCCC CACCCACCCA CTCCCACTTC TCAGCCCTGG
  CGTTCCCCTG TATTGAGGCA TATAAAGTTT GCACGACCAA TGGGCCTCTC TTTCCACTGA
  TGGCTGACTA GGCCATCTTC TGATACATAT GCAGCTAGAG ACACGAGCTC CGGGGGGTAC
  TGGCTAGTTC ATATTGTTGT TTCACCTATA GAGTTGCAGC TGCCACCAGC TCCTTGGGTA
  M
  TTTCTCTAGC TCAGTTTTAC TATAAGTACA GTGTTGTGCC ATGATAAATG TTACCTATCC
  TATTAGATTC TAAAACCTAG AAACATTTCA TCATATCAAG AAGAAAACAT GAACACGTAG
  GCCTTGTCAG ATTGTAAAAA TCTAAGAGAA AGAGTTCCCA TAAGAGGAGG ATATAACCAG
  GTGGGCTTGG TGGCCTGCCT ACAATTCCAG TTGTGTGAGG CTAAGACAGA ATCTCCAGAG
  CAAGGAGGCT AGTAAGACTA TATTGGTGAG CTCTGGCTTG GATTGAGAGA TCTCATCTTA
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss46496765	mCV23012731	ABI	CRAMUS_MOUSE	f	SNP	A	C
ss134085417	ENSMUSSNP2087363	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs31211575					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9149440 () rs orientation: forward

Symbol	Name	Function Class
H2al1m	H2A histone family member L1M	563 bp upstream
Xk	X-linked Kx blood group	Intron