rs31212655 SNP Detail

Summary

• ID
  rs31212655
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43447303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCGCAGG GAGGTCCCCT
  TTCTCTGAGC CCAGGACCCT CCCACCCCCA GGCTCACATT CTTTCTCTCA GGATCTTCAA
  GCGGGTCTCT TAAGCTCCCT CTTCCCCAGG ACGTTGGAGT CACAGCCTCA GATCTTTCTC
  TCCAATCTCA CAAGTGGGCC AGAACTCCTT TATAATGTCT GGATCCCCAA CAGCAAGCTC
  Y
  CCCCCACACT AAAATTCGGG GATCTAGAGC TCTGCCCTAG CTTTCTCAGC CCCTAGCTCC
  ATCCTCCAGC AAGACTCAAG ACAGCTCCGG AAACACCTCC TTCCCCCAGT TCCCCAGACA
  ACAAGATCTC AGGCTCCTCC CTCGGACTTC CTCTTAGTTC CACCCTCTTC CTCAGAGGCC
  ACCATGGGAC GCCCCCCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss46008659	mCV23833699	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss149084110	ENSMUSSNP1093820	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs31212655					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43447303 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18945	CpG island 18945	1037 bp distal
Cpgi18946	CpG island 18946	162 bp distal
Klk8	kallikrein related-peptidase 8	within coordinates
Klk9	kallikrein related-peptidase 9	1122 bp downstream
Rr646021	regulatory region 646021	406 bp distal
Rr646022	regulatory region 646022	292 bp distal
Rr646023	regulatory region 646023	186 bp distal
Rr646024	regulatory region 646024	within coordinates
Tssr66051	transcription start site region 66051	313 bp downstream
Tssr66052	transcription start site region 66052	293 bp downstream
Tssr66053	transcription start site region 66053	144 bp upstream
Tssr72173	transcription start site region 72173	346 bp upstream