rs31212748 SNP Detail

Summary

• ID
  rs31212748
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:110714335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACAACCCAG AAAACCTTCA GTTTGTGAAA ATAAAGCACA
  TATGTGAGTT CCTAAGATGG AAAGGGCACA CTGTAGGGAC CACTCAAGAA AGCACTGAGA
  Y
  GCCTGAAGGT GAGTTAACTC CAGAGCCCTA GGGAGAACTG TTCATGGAAC AGGGTGGGGC
  ACAGACGCCA AGCTGACAGT CTGTTTGTGT GCTCGGGAGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47529130	NES11186585	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31212748					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47529130	NES11186585	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:110714335 () rs orientation: forward

Symbol	Name	Function Class
2010109N18Rik	RIKEN cDNA 2010109N18 gene	947 bp downstream
Gm64950	predicted gene, 64950	957 bp upstream
Rr173823	regulatory region 173823	1466 bp proximal
Rr179353	regulatory region 179353	1535 bp distal
Rr187611	regulatory region 187611	within coordinates
Rr187612	regulatory region 187612	1466 bp proximal
Rr382637	regulatory region 382637	1240 bp downstream
Tssr79380	transcription start site region 79380	1027 bp downstream