rs31213040 SNP Detail

Summary

• ID
  rs31213040
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:110682194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGCCACT TGATGTGGTG
  CCAGTCCTTA TGACACAGTA GCAAGCACTG TCAACCCCCC GGGACATCTC TCCAGCTCTG
  CTTCAGAACA TTAAAAAATG TAAAAAGTGT TCAAAGTAGT TTCACCATGT AGCACAGGCT
  AGCCTGAAAC TCTTGATCCT TCCATTCTGG GGTTACAAGT GCAAGCCAGT ATTCCTGGCA
  Y
  GGCAGTGAAT TTAACAGCTT CAGTGGGACA AAGGGACATT TAGGTTTCTC CAGTACGTTG
  TGATGTGATA ATTTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTTACTAGGG ATGGGAAATC AGGGCCTCAC CTACTGCCAG AGAACATTTC CTAGTGAAAC
  AGCAGAAGGC CTAGAGTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47528710	NES11188134	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31213040					SNP	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47528710	NES11188134	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:110682194 () rs orientation: forward

Symbol	Name	Function Class
Marveld3	MARVEL (membrane-associating) domain containing 3	within coordinates
Rr187605	regulatory region 187605	within coordinates
Rr401124	regulatory region 401124	1550 bp upstream