rs31213535 SNP Detail

Summary

• ID
  rs31213535
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:110675366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAATAGTT ATTTCCGAAG
  CCGCTGCCGC TGGCAAAGCT GGCGCTGAAT CCGGCCAGGA CAAAATAGGA AGCCACGATG
  CATATGAGAA CCATGGCATT CAAAATCACC TCCATTATCT GCACCACACC TAGGGGAAGA
  GAGAGTCCGG TTTAAGGTTG GATCACTCAC CTGATCAAGG TAGGGGTTCC CTGGATCCTT
  W
  AAATAAATGA TCTGATTCAG CAACATTGTC AACACTCTTG GTTTTGTCTT TTTTTTTTTT
  AAGATCTTTT TATTTTATGT ATGTGAGTAC ACTGTAGCTG TCTTCATGCA CACCAGAAAA
  GAGCATCAGA TCCCATGAGG ATGCTTGTGA GCCACCATGT GGTTGCTAGG AATTGAACTT
  AGGACCTCTG GAAGAACAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47528611	NES11188486	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31213535					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47528611	NES11188486	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:110675366 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21023	CpG island 21023	79 bp distal
Marveld3	MARVEL (membrane-associating) domain containing 3	Intron
Rr669768	regulatory region 669768	1175 bp distal