rs31213538 SNP Detail

Summary

• ID
  rs31213538
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:110675739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAACTTAG GACCTCTGGA
  AGAACAGTCA GTGCTCTTAT CTCACTGAGC CATCACTCCA GCCCCCTGGT TTTGTCTTTA
  AAAAAAAACA AAACAATACA AAACACCCTA TGTCATTTTA AAAAGTCCCA GTGCTTGTGG
  TGGGACCCAG GATGCAAGCA GCAAGTGCTC TACGGATGGG CTGAACAACC CCAGCCCAGG
  W
  GTTCTGTTTC TAAAACATAC TTTAAAATAT CATTGCTGGC TGGGTGGGTG GAGTGTTGGC
  TCAGCAGTAA GCGCAATTGT TGCCCTTACA GAGGACCTGG GTTGGGTTCC CAGTACCCAT
  GCACCAGCTC TTAGGCCGAT TTAATTCCGG TTCCAGGGAA TCCAGTGCCC TCTTCTGACC
  TCCGCAGGCA CCAGATATAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47528614	NES11188451	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31213538					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47528614	NES11188451	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:110675739 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21023	CpG island 21023	452 bp distal
Marveld3	MARVEL (membrane-associating) domain containing 3	Intron
Rr669768	regulatory region 669768	1548 bp distal