rs31213546 SNP Detail

Summary

• ID
  rs31213546
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172199039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGATTGCTG TACAGAGCCT CGGGGAATTT GTGATGTTTT
  GTTATGGTTT GGGCTGAGGC AGAACTCTGG CTGACAGCCA CTATTTTGTT CCATCTCCTG
  R
  TGCCCTTCTG AGAAGTGCCA GCTATTTTAT GAGGCAATGC TGAGAGGAGA GGAACTTACA
  TTCTGATCTC TGCCATTCTG ACACCTGGCA TAAAATGAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45008393	mCV24593838	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss120013156	PARCsnp_1.08845	PARC_SEQ	INBRED	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31213546					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172199039 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1046	CpG island 1046	1503 bp distal
Kcnj10	potassium inwardly-rectifying channel, subfamily J, member 10	within coordinates
Tssr10190	transcription start site region 10190	987 bp downstream
Tssr10191	transcription start site region 10191	771 bp downstream
Tssr10192	transcription start site region 10192	591 bp downstream