rs31215780 SNP Detail

Summary

• ID
  rs31215780
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152061012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAA ACCTATTCCT CAACTTAGGG
  W
  TTCCAAGGGT TGGCATAGCC ATGGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss49715416	NES13070582	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	T	T	T		T		A
ss145725950	ENSMUSSNP2374478	ENSEMBL	ENSEMBL_Sanger	f	SNP						T
ss320062878	CHEV_1_154032391	CHEVERUD	SCREENING_POP	f	SNP								T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs31215780					SNP	T	T	A	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49715416	NES13070582	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152061012 () rs orientation: forward

Symbol	Name	Function Class
Gm53608	predicted gene, 53608	within coordinates
Rr420427	regulatory region 420427	1485 bp proximal