rs31215947 SNP Detail

Summary

• ID
  rs31215947
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146355197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCACTCG GGGAGAGAAA
  ATTCACCAAG ACTAAAATTT TCAAGAACTG CATAAAACAT GCTCCTCATC AAAATCGCAC
  ATACGGGGAA GTCCCTTGGT TAGAACAGCT AATAATCTGT TATTTAACTT CCATAACAGA
  CTGAAGTTGC AAATGAAGCC CACATTTTGC CAAGCAGCCA TGACTGTACT ATGGCATCAT
  Y
  CATAGCTTTC CTGAGGAGGA GGAACTCGCC CCATCCCGGC AGCTCATTGC TACAGACTGA
  AGGGGTGAAA TGCCACCAGT CGACTCCAGC TCAGAGGGAC AAACAATCAA CCCAAGATTT
  TGTACATGAT TAAAGCCAGA ACAAAGAGAC AATTCATTCA CAGGCTGGGA TTTCCGAGTT
  TCTAGGCAAG CATCTGCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47029266	NES10858768	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31215947					SNP	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47029266	NES10858768	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146355197 () rs orientation: forward

Symbol	Name	Function Class
4930503B20Rik	RIKEN cDNA 4930503B20 gene	within coordinates
Gm16325	predicted gene 16325	within coordinates
Samd13	sterile alpha motif domain containing 13	within coordinates
Tssr1086	transcription start site region 1086	1885 bp downstream
Tssr1087	transcription start site region 1087	1892 bp downstream
Tssr1088	transcription start site region 1088	1919 bp downstream
Tssr36049	transcription start site region 36049	1130 bp upstream
Tssr36050	transcription start site region 36050	1849 bp downstream
Tssr36051	transcription start site region 36051	1862 bp downstream