rs31216758 SNP Detail

Summary

• ID
  rs31216758
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152060645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAGCATGA AATAGTTCAT
  AAATCCTCCC TGTTGATCAT TATTACCAGA TGGGCCAGCA GAGATGGCTC ATCTCCCATG
  CCTCCTGGAG ATGCCCAGGG TGTGACTGAG GTCTGCGAAG GAACTCTCAT CAGCATGAGT
  TCTCTGTAGA GGGCAACTCC AATGTCCTTG ATATGGAGGA GAGACCCTAC TGCCGCTTCT
  Y
  CTTCCTGAAA TCCCTATAAT CAATGTACGG CTCCCCTCAT CCTTATAATT CCCTGAAGCT
  TGTTTCTTAT TCTCTGTTTT CCCAGACTCA GTGATCTTTG AATGCCCAGG GAATAAGTCC
  AGCAATGGTG AATGGCATTG TCTCTCTTGC CAGCTCGCTG TAGTTCAGTT TTTCTGCACA
  ATACTTCTGC AGCCAACCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49715424	NES13070574	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31216758					SNP	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49715424	NES13070574	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152060645 () rs orientation: forward

Symbol	Name	Function Class
Gm53608	predicted gene, 53608	within coordinates
Rr420427	regulatory region 420427	1852 bp proximal