rs31216857 SNP Detail

Summary

• ID
  rs31216857
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146355690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCAACAA GTACTGACTC
  ATTCCAGCAA GGCATAGAGA AGACAGGACT GAACTCCCGG TGGAGACAAG GGGGTCCCGG
  ACTTACAAAT CAAGGAGACA GAGTGGTCAC TACTTCACTG GGTAATAGGC AGGGCCTAAT
  ACGAATCTCT TTAAGCCTGG TTTCCTCACC TGTTAGATGA GGAGAGCAGC AACCTGATTG
  Y
  ACCTGGCTGG ATTCAGAGAC CATCTACTGA GTATCGAACA CATGACATGC AGATAAACCC
  TTAACCCAGT ACTTCTCACT GTCTCTGTCA GCATTAATCT ACGGTGGAGG ACATGCCTCA
  ATTTGGACTT GATCATGATA TGAACCATGG GAAACTCTTG GGGAGAGAGA GAGAAGACAC
  AAAAAGAGGT TCAGGGAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47029276	NES10858589	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31216857					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47029276	NES10858589	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146355690 () rs orientation: forward

Symbol	Name	Function Class
4930503B20Rik	RIKEN cDNA 4930503B20 gene	within coordinates
Gm16325	predicted gene 16325	within coordinates
Samd13	sterile alpha motif domain containing 13	within coordinates
Tssr1086	transcription start site region 1086	1392 bp downstream
Tssr1087	transcription start site region 1087	1399 bp downstream
Tssr1088	transcription start site region 1088	1426 bp downstream
Tssr36049	transcription start site region 36049	1623 bp upstream
Tssr36050	transcription start site region 36050	1356 bp downstream
Tssr36051	transcription start site region 36051	1369 bp downstream