rs31216861 SNP Detail

Summary

• ID
  rs31216861
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146355950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAACCCAG TACTTCTCAC
  TGTCTCTGTC AGCATTAATC TACGGTGGAG GACATGCCTC AATTTGGACT TGATCATGAT
  ATGAACCATG GGAAACTCTT GGGGAGAGAG AGAGAAGACA CAAAAAGAGG TTCAGGGAAA
  GGACAGGAAC AGTCAAAAGG AGGAGGCCTC TGTGTGGGAA ACAGCAAGGG CAGAGCACCG
  Y
  GAGTCTGCTT TTCACTGTGG CGTGGGATCC AGCCCCCACA CCCTGACTGA GGGAAGAAAG
  CTCAGTTTTG AGAAGAGTCT GGAAGGTCAG CTCTGCTCCT CACAGGTTCT CTGTGTTAAC
  ATCTGACCCA CGACTCCCCT CCACAGTGGA GAGAGCTTTG AGCTAACCAG CCCTCTGTCT
  ATGCCATTCC CCCTCAGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47029280	NES10858591	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31216861					SNP	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47029280	NES10858591	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146355950 () rs orientation: forward

Symbol	Name	Function Class
4930503B20Rik	RIKEN cDNA 4930503B20 gene	within coordinates
Gm16325	predicted gene 16325	within coordinates
Samd13	sterile alpha motif domain containing 13	within coordinates
Tssr1086	transcription start site region 1086	1132 bp downstream
Tssr1087	transcription start site region 1087	1139 bp downstream
Tssr1088	transcription start site region 1088	1166 bp downstream
Tssr36049	transcription start site region 36049	1883 bp upstream
Tssr36050	transcription start site region 36050	1096 bp downstream
Tssr36051	transcription start site region 36051	1109 bp downstream