rs31216939 SNP Detail

Summary

• ID
  rs31216939
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75424727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCG TGCTTCCCTT CTGTGGGGTT
  Y
  ACCATCCAAC ATCCCTGACT TCAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss39266591	mCV22627151	ABI	CRAMUS_MOUSE	f	SNP		T	T				C
ss51533029	NES14628125	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	C	C	T	T		T		C
ss139749969	ENSMUSSNP2388662	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T				C
ss324673331	CHEV_14_75587094	CHEVERUD	SCREENING_POP	f	SNP										T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs31216939					SNP	T	T	T	C	T	C	C	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533029	NES14628125	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75424727 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr495439	regulatory region 495439	578 bp distal
Tssr4482	transcription start site region 4482	1389 bp upstream
Tssr126634	transcription start site region 126634	within coordinates