rs31217662 SNP Detail

Summary

• ID
  rs31217662
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146357371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGGTTCT GCCTGCCTTG
  TTTCCATAGT GGTGGGGAAT CGGAGGTGGC CACTATAAAA ACTGGAAAGA CCTTCTCTGT
  TTCAAAGACA AACATGCACA CAATCAACAA ACACCCAGTG TCTTGTCAAC AGAGAGAAGC
  CATTTGTGTA GCTTAAAAAG CATTTGCCTT GTTTGTTTTT AACAGCCACA AGCCAGCAGA
  Y
  CCAACATCCA GTTTGGGTTA CTAAGGGAGC AGATGTTTTT AGTGCCCTCT TCTGTGTCAC
  TGGGACTTGC CTTTGTGGTA TTTAAAATGA TTTTATTTTA CTTTTTTATG TGTCTGTGTG
  TTTTGCCTGC ATGTATGTCT GTGTATTGCT TGTGTGCAGT GCTGGGTGCC ATTTGCCTGC
  AGTCTCTGCA GCGGCTACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47029294	NES10858599	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31217662					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47029294	NES10858599	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146357371 () rs orientation: forward

Symbol	Name	Function Class
4930503B20Rik	RIKEN cDNA 4930503B20 gene	299 bp upstream
Gm16325	predicted gene 16325	within coordinates
Samd13	sterile alpha motif domain containing 13	within coordinates
Tssr1086	transcription start site region 1086	284 bp upstream
Tssr1087	transcription start site region 1087	277 bp upstream
Tssr1088	transcription start site region 1088	243 bp upstream
Tssr36050	transcription start site region 36050	318 bp upstream
Tssr36051	transcription start site region 36051	289 bp upstream