rs31218804 SNP Detail

Summary

• ID
  rs31218804
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146357403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGAATCG GAGGTGGCCA
  CTATAAAAAC TGGAAAGACC TTCTCTGTTT CAAAGACAAA CATGCACACA ATCAACAAAC
  ACCCAGTGTC TTGTCAACAG AGAGAAGCCA TTTGTGTAGC TTAAAAAGCA TTTGCCTTGT
  TTGTTTTTAA CAGCCACAAG CCAGCAGACC CAACATCCAG TTTGGGTTAC TAAGGGAGCA
  R
  ATGTTTTTAG TGCCCTCTTC TGTGTCACTG GGACTTGCCT TTGTGGTATT TAAAATGATT
  TTATTTTACT TTTTTATGTG TCTGTGTGTT TTGCCTGCAT GTATGTCTGT GTATTGCTTG
  TGTGCAGTGC TGGGTGCCAT TTGCCTGCAG TCTCTGCAGC GGCTACAAGA GGGTATCGGA
  TCGCCTGGAA CTGGAGTACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47029296	NES10858600	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31218804					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47029296	NES10858600	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146357403 () rs orientation: forward

Symbol	Name	Function Class
4930503B20Rik	RIKEN cDNA 4930503B20 gene	331 bp upstream
Gm16325	predicted gene 16325	within coordinates
Samd13	sterile alpha motif domain containing 13	within coordinates
Tssr1086	transcription start site region 1086	316 bp upstream
Tssr1087	transcription start site region 1087	309 bp upstream
Tssr1088	transcription start site region 1088	275 bp upstream
Tssr36050	transcription start site region 36050	350 bp upstream
Tssr36051	transcription start site region 36051	321 bp upstream