rs31219013 SNP Detail

Summary

• ID
  rs31219013
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:110709699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTAGCAGG ACTTGTCTGT
  GGCCTCTTAT GCTTCTGAGC AGCGACTGGG AATGATTACA TGGGGCACAC TTGGGGGTTC
  GCATGAGGTC ATAGACATCT TGGTCCAAAG CCAGCAACGG GCTCTGATGG GCTGGCCATC
  CAAGATGGCT TCTTTATCTG TTCAGCACCC CAATAGTTTT GTGTCCCCTC TTTGGCAAAA
  Y
  ACACTTTCTT TTATTTTTAA TTTTACCCTT ATATTGTTTC ATCTTATTAG TTCTTTCCCC
  CCACTTTATT TATATTCCCA TACAGCTTGT TTCCCCGAAT ATGATATCCT GATTGTGGTT
  TCTCTTCCCT CTGCCCCTCC CAGGTTTTCC CTACCTCTCC TCCTATCCAG ATCCACTCCC
  TTTCTTTTTC TCATTAGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47529103	NES11187001	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31219013					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47529103	NES11187001	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:110709699 () rs orientation: forward

Symbol	Name	Function Class
Gm64950	predicted gene, 64950	within coordinates
Rr173822	regulatory region 173822	1502 bp proximal
Rr182743	regulatory region 182743	111 bp distal
Rr187609	regulatory region 187609	502 bp proximal
Rr382637	regulatory region 382637	1767 bp upstream