rs31219444 SNP Detail

Summary

• ID
  rs31219444
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:47888762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATG CTTTTTTTTT AATGGCCAAA
  Y
  TTTTAATTAA AAAGATTTTT TCAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39266015	mCV23875073	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss139408832	ENSMUSSNP4886801	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss324597852	CHEV_14_48270980	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31219444					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:47888762 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6388	CpG island 6388	1146 bp distal
Ktn1	kinectin 1	within coordinates
Rr297095	regulatory region 297095	561 bp distal
Tssr125324	transcription start site region 125324	1916 bp downstream
Tssr125325	transcription start site region 125325	916 bp downstream