rs31219485 SNP Detail

Summary

• ID
  rs31219485
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:151954979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aagaaacca atcattaatt atactgaaag
  acatatacct caaggttacc aaacggtaga tacatttact gagagaaaaa aaatcccagc
  tagcaagtgc agaaaaaaAG ACTATCCTAG CTTTATAACC TGTTCTGCAA TGGTGGTGAC
  Y
  CTCGGTGGCT TGAAGGGCCT GGGATAAGTC TATTATGGAA GGAGCAGCTT GACAACAAAA
  TCCAGAGTCA TCCATCAGAG CCTGGATAGA GTCCCAGCAC CTCACGTACT ACCTACGAGA
  CGTGAGCCAA GGCCCCTTCT TTTAACTTCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49715951	NES13073159	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	C	T	T	C		C	T	C	C		C
ss320062219	CHEV_1_153926358	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31219485					SNP	T	T	C	T	C	T	C	T	T	C	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49715951	NES13073159	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151954979 () rs orientation: forward

Symbol	Name	Function Class
1700025G04Rik	RIKEN cDNA 1700025G04 gene	within coordinates
Gm71151	predicted gene, 71151	1603 bp downstream
Rr420414	regulatory region 420414	1632 bp distal