rs31219556 SNP Detail

Summary

• ID
  rs31219556
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146358717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCTTGCA GGTAGACTAT
  GTTGCCACCT GCTTGAGGCC TTCTTGTTCT TCCTTCTCCC ATTAGCATCA GTGACCAGAG
  GATATTGAGA ACTGCCGCCA TGAATGACAT AGGCTCTCTC CCCTGGACTT GTGAATAGAG
  TGAAGCAAAC CGTTTCTATC GCTCTCCTCA GACTGTTGCT CTGAGGAAGA GGCAACTATG
  Y
  GCTCCGCCAT GCTCTCACCT GTTTGCCACA GTGGTCTCCT TACACTGAGA ACCTACTCCT
  GACATGCCAG CAGCTCAACA AGCCCCTCCC TGTCTTCTCT CCCTCTTACA AGTCTACCTT
  TCATTTCAGT GCTCTGTTCT GCAGTGTTAC AAGACCCTTC AATCCTATGT GAGGCCCATG
  GTTGACAGGG GAGCCATTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss47029308	NES10858472	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs31219556					SNP	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47029308	NES10858472	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146358717 () rs orientation: forward

Symbol	Name	Function Class
4930503B20Rik	RIKEN cDNA 4930503B20 gene	1645 bp upstream
Gm16325	predicted gene 16325	1247 bp downstream
Rr375877	regulatory region 375877	1880 bp upstream
Samd13	sterile alpha motif domain containing 13	within coordinates
Tssr1086	transcription start site region 1086	1630 bp upstream
Tssr1087	transcription start site region 1087	1623 bp upstream
Tssr1088	transcription start site region 1088	1589 bp upstream
Tssr36050	transcription start site region 36050	1664 bp upstream
Tssr36051	transcription start site region 36051	1635 bp upstream