rs31219558 SNP Detail

Summary

• ID
  rs31219558
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146358847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAATAGAG TGAAGCAAAC
  CGTTTCTATC GCTCTCCTCA GACTGTTGCT CTGAGGAAGA GGCAACTATG CGCTCCGCCA
  TGCTCTCACC TGTTTGCCAC AGTGGTCTCC TTACACTGAG AACCTACTCC TGACATGCCA
  GCAGCTCAAC AAGCCCCTCC CTGTCTTCTC TCCCTCTTAC AAGTCTACCT TTCATTTCAG
  Y
  GCTCTGTTCT GCAGTGTTAC AAGACCCTTC AATCCTATGT GAGGCCCATG GTTGACAGGG
  GAGCCATTCT TCCACTAGTC CTTACAACAC AGCCTGCAGA CTAACAGACT TCTTGTTCCC
  ATGCCACGAG CACCCAAGCC AGGGGAGCCT GTGATTTTGT GTCTTTGATT CACTGCTGCT
  GACAATAACG GAACAAAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	CAST/EiJ	DBA/2J	MOLF/EiJ
ss47029310	NES10858473	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	CAST/EiJ	DBA/2J	MOLF/EiJ
rs31219558					SNP	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47029310	NES10858473	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146358847 () rs orientation: forward

Symbol	Name	Function Class
4930503B20Rik	RIKEN cDNA 4930503B20 gene	1775 bp upstream
Gm16325	predicted gene 16325	1377 bp downstream
Rr375877	regulatory region 375877	1750 bp upstream
Rr587059	regulatory region 587059	422 bp proximal
Rr587060	regulatory region 587060	1679 bp proximal
Samd13	sterile alpha motif domain containing 13	Intron
Tssr1086	transcription start site region 1086	1760 bp upstream
Tssr1087	transcription start site region 1087	1753 bp upstream
Tssr1088	transcription start site region 1088	1719 bp upstream
Tssr36050	transcription start site region 36050	1794 bp upstream
Tssr36051	transcription start site region 36051	1765 bp upstream