rs31220559 SNP Detail

Summary

• ID
  rs31220559
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43427524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GATGGGGAAA GGAGACCAGA TGAATCTTCA GAGAGAAAGA TCAGAGTCAC TCAAGAGGCA
  TGGTGATCTG GAGCAGTCAG GAGAGGGATG AGCTAAAAGG AAGATGAGAA ATTCTGAGGG
  ACTCACTTTT GGGCCTCAAG ACTGAGACAG GTGTGAGGCA GGTGTGAGAC AGGTGTGAGG
  CAGGTGTGAG AGCAGGTGTG AGACAGGTGT GAGACAGGTG TGCGGCAGGT GTGATTCCCA
  AATCTATAAC TTTCTAGTTG TGGGATCTAA AGCAGGTGGC TTTACCTCTC TGAACCTTGG
  K
  TTTTTTTTTT TTTTCCTAAA AAGAATAATC ATATCTACCT ACCACAGTGG GGTCAGAGGT
  AATGCACAGA GAACAAGTAG TAGGAAGAAT TTACTCAATG CATTGCTGTT GCAACAGTTA
  CAAGCATAGA GATGGGTTCA GGGCAAGGAT TGTCCCAGGT GCTGGCTACT GTGGTGGGGT
  TGGAAAACCA GGTGACCACT GCTCACACCC TTCACTGCTG TCCCCACAGT GCGCCTGCCT
  CATTCCTTGC GATGTGCCAA TGTCTCCATC ATCGAACACA AGGAGTGTGA GAAGGCCTAC
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss46009490	mCV23832705	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G
ss149083675	ENSMUSSNP6378121	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31220559					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43427524 () rs orientation: forward

Symbol	Name	Function Class
Klk11	kallikrein related-peptidase 11	within coordinates
Tssr66045	transcription start site region 66045	1802 bp downstream