rs31220608 SNP Detail

Summary

• ID
  rs31220608
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:110712847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGCATAA AAAGTCTGAT
  GCTCGAGTTG TAAAATTACA CTCAGATTCC ACACGAACTC TCCTGTGTGT GTGTCTGTTT
  GTCGCTCATC CACGCTTTGC CCACCCGCGT CGAGAGACCC CGTTCCACGC AGACACAGGG
  ACCCAGAAGG TCTGCGGCAT CATTTGGCTT TTATTTTAAT ATTAGCTTTT ACTTAGGTAT
  Y
  AATTCAATTT ATGTGTTTCA TTTTGAGACA CCCCAGACTG TAGTTTTTCA ATGGGAGGAC
  TTCCCTGTGC CTGGTGGTGT AACCTTTAGT GATTGTCAAA GCTTGTTGGG CCTTGACTCG
  TGGTCTAGTT TATCTGGTGT CATGGAAACT TTCTATATAG CTCTGGGTCC TCCCCCACAC
  TCTCCCTCCC TGCCTGCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47529118	NES11186799	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31220608					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47529118	NES11186799	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:110712847 () rs orientation: forward

Symbol	Name	Function Class
2010109N18Rik	RIKEN cDNA 2010109N18 gene	within coordinates
Gm64950	predicted gene, 64950	within coordinates
Rr173822	regulatory region 173822	1447 bp distal
Rr179353	regulatory region 179353	47 bp distal
Rr187609	regulatory region 187609	1448 bp distal
Rr187611	regulatory region 187611	30 bp proximal
Rr382637	regulatory region 382637	within coordinates
Tssr79380	transcription start site region 79380	435 bp upstream