rs31220611 SNP Detail

Summary

• ID
  rs31220611
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:110713533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTTCTGG AGCTCTGCAA
  ACCGCATCTA AACCAAGGTC TCATCTAAGG AAAAGGAAAA AAAAAAAAAG GAGTTGTTTT
  CTACAGAGAC AGGTGAGAAG CATGCACAGA TGCCTCAAAA ACACAGGGGC CAAGAAAATG
  TGAATGATAG TCGTCTTTGA TTAACTGATG GGGGGAAAGG AACAACTTTA ATATTATTCT
  R
  TCAATCATTT TGAGAAACGT TTATTTTAGA AAACAGTTCT TGAAGGTTTA CCACTGGATA
  GTAAGGTAAT TGACTAGCCT TTCTGAAAAT AAAACCATTA ATGAGTCTAA AAAAGTGTAA
  AGTTGGGGTG TGGTGGCTCA CACCGGTCCT CTCAGCACCT AGGAGGCAGA GAGACAAAGA
  TGGTGGTGAG TTGGAGGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47529121	NES11186802	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31220611					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47529121	NES11186802	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:110713533 () rs orientation: forward

Symbol	Name	Function Class
2010109N18Rik	RIKEN cDNA 2010109N18 gene	145 bp downstream
Gm64950	predicted gene, 64950	155 bp upstream
Rr179353	regulatory region 179353	733 bp distal
Rr187611	regulatory region 187611	within coordinates
Rr382637	regulatory region 382637	438 bp downstream
Tssr79380	transcription start site region 79380	225 bp downstream