rs31220637 SNP Detail

Summary

• ID
  rs31220637
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28948432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCA TAGGCAGGGA GAGAGCCCCA
  R
  TACAGAGATG GTCTGCTTCC TGCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46009320	mCV24569334	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss148644062	ENSMUSSNP3265044	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
ss322127533	CHEV_7_30034026	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31220637					SNP	G	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28948432 () rs orientation: forward

Symbol	Name	Function Class
2200002D01Rik	RIKEN cDNA 2200002D01 gene	540 bp upstream
Cpgi18753	CpG island 18753	821 bp distal
Gm73451	predicted gene, 73451	822 bp downstream
Rr644523	regulatory region 644523	1382 bp distal
Rr644524	regulatory region 644524	1442 bp distal
Rr644525	regulatory region 644525	51 bp distal
Rr644526	regulatory region 644526	1816 bp proximal
Tssr65618	transcription start site region 65618	1337 bp downstream
Tssr71635	transcription start site region 71635	1869 bp upstream
Tssr71636	transcription start site region 71636	1262 bp upstream
Tssr71637	transcription start site region 71637	1068 bp upstream
Tssr71638	transcription start site region 71638	1035 bp upstream
Tssr71639	transcription start site region 71639	583 bp upstream
Tssr71640	transcription start site region 71640	539 bp upstream
Tssr71641	transcription start site region 71641	474 bp upstream
Yif1b	Yip1 interacting factor homolog B (S. cerevisiae)	1410 bp downstream