rs31220721 SNP Detail

Summary

• ID
  rs31220721
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146423161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCAATGAA ACATAAAATT
  TTGATGATTT GTTGAGTTCT TATTTTTGTC AAATATAAAT TTGACACATT GCACATGCAC
  ATTACTTTAC TCGGGATTTT CAATTGGTAT TAAGTGATGG CTTTCTAGAG GTTATAATTT
  AGTATGCACT GGTCTCTTTG AACAGGGGAT TACAAAGCAC AGCACCAGAA CCTATGTTCG
  M
  ATTTCTTAAT TGGGTCTTTT GTCGCTGAGT TGGCTCGAAA TCCATTTTCT TTTCATTTGT
  AGATTTTAAA TATTCAACTT TTAAATTCTT TTCAGGATGT TAATTATCAG AAATTTAACA
  TTTAGAAAAT ACTGCACGTT ACAGCACCAG GGAAGGTCTA TTCACTGTGT CCAGGTAGCT
  CTGCTCCAAG GACTCCGAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47029962	NES10855296	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31220721					SNP	A	A	A	A	A	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47029962	NES10855296	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146423161 () rs orientation: forward

Symbol	Name	Function Class
Rr587074	regulatory region 587074	860 bp proximal