rs31221171 SNP Detail

Summary

• ID
  rs31221171
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:166025198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA CCATTTCTCA TGTTCAGGCC
  Y
  TTTTGTTTTG TCTTCTGGCC ACTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46498963	mCV24472951	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss134530857	ENSMUSSNP337593	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss325992456	CHEV_X_163680134	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31221171					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:166025198 () rs orientation: forward

Symbol	Name	Function Class
Tlr8	toll-like receptor 8	494 bp downstream
Tssr164588	transcription start site region 164588	1062 bp upstream
Tssr164589	transcription start site region 164589	944 bp upstream
Tssr164590	transcription start site region 164590	680 bp upstream
Tssr164591	transcription start site region 164591	565 bp upstream
Tssr164592	transcription start site region 164592	1881 bp downstream