rs31221533 SNP Detail

Summary

• ID
  rs31221533
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146423439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTAAATT CTTTTCAGGA
  TGTTAATTAT CAGAAATTTA ACATTTAGAA AATACTGCAC GTTACAGCAC CAGGGAAGGT
  CTATTCACTG TGTCCAGGTA GCTCTGCTCC AAGGACTCCG AGTCGTTATC CTCACCCGAA
  AGACAGAAAA CAAGAGTGCA AAGAGAAAGA ACTAATAACA GGCATTTTCA CTGTGCCCTT
  Y
  GCCCTGATGC AGCTGGCGAT TTTCCAAGTC ACATCTCCCA TCTTTTAACA GCAAAGCCAA
  GTGCATATGC CTAGTGTGTA TTTATTCAGA AAGCAAATGA CTTATTTGGC TTCATTTGAG
  GGAGCCTTCC CTGGTGGCAA GAGACTGGAG AAAATTTCCC TTCAGCTGAG AGATGCTGAG
  CCCTTTATGT TACTGTACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47029976	NES10855303	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31221533					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47029976	NES10855303	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146423439 () rs orientation: forward

Symbol	Name	Function Class
Rr587074	regulatory region 587074	582 bp proximal