rs31221621 SNP Detail

Summary

• ID
  rs31221621
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79365685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAGAATA GGACACTTCA
  ACTTTGTGAA ACACAAAAAT GCAAATTAAA GATCTTAAGG GCCTGGAAGA ACCACCTATT
  TTTACATATC ACAAAAAATG AGAGATGCTC AGGGCGAGAG GGGGAGGAAG AGAGGAAAGG
  GAGGGAGGGG GTCCAGAGCG TCCACACTCC GGCCCACTTC TAAGAGATGA TGTAGGCATT
  Y
  GTCCCCAGTA GCGTAAGGGG CACATGGTCT CCACTAACTT GTATTTGTAA TGAGGAGACA
  GACATGTCAC ATGGATCAGG ATTTGCTGTC CCACATTCTC AGGCACCAGG GACTGGTGGG
  AAGGACTGAG GAGCCCACAG GGTTTGACTT TACTTGACTG GCTCCTGTCT TTTAAACAGC
  AGAAGTTTTG TTTTTAAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47030551	NES10778527	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31221621					SNP	T	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47030551	NES10778527	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79365685 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	mRNA-UTR
Spmip2	sperm microtubule inner protein 2	Intron
Tssr33691	transcription start site region 33691	1340 bp upstream
Tssr33692	transcription start site region 33692	within coordinates
Tssr33693	transcription start site region 33693	119 bp downstream
Tssr33694	transcription start site region 33694	434 bp downstream