rs31221776 SNP Detail

Summary

• ID
  rs31221776
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151849917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAGGGTCT GCCCTATTCA
  GTCTATAGAT GCAAATGCTG TATTAAAGCA CATAAAGTTA CTACAGGACA CCAGGAACTA
  ATGTGCCACC CAAGGAAAAA AGATAAAAGC TAAAATGTCA AACCAGATGA TACGTCAACT
  GGTCACAGAG ACTTCCCAAT GTGTCACTGA TGATCCCTGT CCCCTTCTCC AAGACTGGCT
  S
  AACATTTCCT TCTGCTCAAA ATCTTTCCAG TCACCAGCTG ATGACAAGCT GGCCTTGTGA
  AAGGCCCTGC TACAACACTG GCCCACAATG ACTCTCCTAG GATCCCAAGT GAAGGCCCAC
  CATTCTATGC TAGGACCCCA CCCCCACCCC ATCTTCCTGA GGCCTTACTA AGAGACTCCC
  CTTACTTCTA CTTGCACTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45159850	mCV24640403	ABI	CRAMUS_MOUSE	f	SNP		G	C					C		C
ss49716713	NES13076278	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	C	C		C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31221776					SNP	G	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49716713	NES13076278	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151849917 () rs orientation: forward

Symbol	Name	Function Class
1700025G04Rik	RIKEN cDNA 1700025G04 gene	Intron
Rr420390	regulatory region 420390	728 bp proximal
Rr420391	regulatory region 420391	1251 bp proximal