rs31222468 SNP Detail

Summary

• ID
  rs31222468
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44398514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTCCGCC TCCGCCTCCA
  CGGGTACCTC GTCACTGGTT TCTTTGGGAT TGTGGGGCCC GGTCCAGTCT CTGCTACTTA
  GGGAAGTGTT AGTCCCACAC CTGTGGAATT TAGCCTTTGG TACTCTGCTG TGCTGCGTTC
  CTGCAACAGG AGCATAGATG GTAGCAAGCT GATGGTCATA CGTAGGATAA ATGAACTAAA
  M
  AAATGGGTGC ATAATAAAAG CCGACTTGAG TATCAGTAGT CGGAACTGAA TGTGCAGCCT
  TAGACAGGAG ACCTCAACAC TCAAGATCCG AGCACTTACT GTATGCAAGG ATCTGTGCAA
  CAGACACTTA TTGTATTATA TACCCGAACT GCCACCTCCC CTAGGAGTAG CTCTAAACTC
  AGCAATGTTC TAGCACTTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	WSB/EiJ
ss46009341	mCV27580303	ABI	CRAMUS_MOUSE	f	SNP	C	A	C		C		C
ss51890941	NES14914128	PERLEGEN	MM_PANEL2	f	SNP			C	C		C		C	A		A	C
ss149120982	ENSMUSSNP4970986	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C				C			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	WSB/EiJ
rs31222468					SNP	C	A	C	C	C	C	C	C	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51890941	NES14914128	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44398514 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18993	CpG island 18993	44 bp distal
Rr400296	regulatory region 400296	494 bp downstream
Tssr66420	transcription start site region 66420	530 bp downstream
Tssr66421	transcription start site region 66421	456 bp downstream
Tssr66422	transcription start site region 66422	439 bp downstream
Tssr66423	transcription start site region 66423	162 bp downstream
Tssr66424	transcription start site region 66424	93 bp downstream
Vrk3	vaccinia related kinase 3	within coordinates
Zfp473	zinc finger protein 473	473 bp upstream