rs31222561 SNP Detail

Summary

• ID
  rs31222561
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79365870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGATGTAG GCATTCGTCC
  CCAGTAGCGT AAGGGGCACA TGGTCTCCAC TAACTTGTAT TTGTAATGAG GAGACAGACA
  TGTCACATGG ATCAGGATTT GCTGTCCCAC ATTCTCAGGC ACCAGGGACT GGTGGGAAGG
  ACTGAGGAGC CCACAGGGTT TGACTTTACT TGACTGGCTC CTGTCTTTTA AACAGCAGAA
  K
  TTTTGTTTTT AAAGTATTTG AACATGGACT GTCTTATGGT CAGTAAACTA AGGTTCTGTA
  GGTTCAATGA TCAGTTGGGT TTTTACAGTT CGTCACTTTG GTAAGTTTTA CAAATGGTCA
  AGTTAATTTC TAGAAAGATT TTTTTTTAAA GAATATGAGA GGGATTAAAA AGTGCAGAAC
  TGATCATATA AAAACCTAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47030561	NES10778532	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31222561					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47030561	NES10778532	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79365870 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	within coordinates
Spmip2	sperm microtubule inner protein 2	within coordinates
Tssr33691	transcription start site region 33691	1525 bp upstream
Tssr33692	transcription start site region 33692	157 bp upstream
Tssr33693	transcription start site region 33693	39 bp upstream
Tssr33694	transcription start site region 33694	249 bp downstream