rs31223468 SNP Detail

Summary

• ID
  rs31223468
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:68457331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGG GGTTATGGAA CCTAAAGAGG
  Y
  CAAGCAGGAT GCATAATGGA AGAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46499589	mCV24293448	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss134197419	ENSMUSSNP4978155	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31223468					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:68457331 () rs orientation: forward

Symbol	Name	Function Class
Aff2	AF4/FMR2 family, member 2	within coordinates
Rr6038	regulatory region 6038	within coordinates
Rr9940	regulatory region 9940	1071 bp proximal
Tssr161151	transcription start site region 161151	1587 bp upstream