rs31223552 SNP Detail

Summary

• ID
  rs31223552
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152062707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGCATCA GATTCCCTGA
  GACTGGAGTT CTATGTAGGT GATAGTGAGC CATCATGTAG GTGCTGTGGG CCAAACCCGG
  GTTGTCTGAA AGAGCAGTGA GTGCTTTTAG CTGCTGAGCC ATCTTGCCAG AGTTCATCTT
  CATAGGAATA TTTTTTCATA TGAGTAGTAA TGGTCTCTGC ACATTTTTCA GATTCTAACC
  R
  TTTCACTTAA TATTACGTTG GAGATCTTTG CATCTGGTTA TATAAACTCT TCTTTTATTT
  GCATACTACC TCATTTTGGG TCTGTTGATT TATCTAGTCA CCTTTGGAAA ACACCATGTT
  GTATCTGGCC TTTGCTAAGA CATGCTGCTG CAATGTGTGA CACATACATG TAGCCCTTGG
  TAGAGGTGTT GTTATGTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	WSB/EiJ
ss49715409	NES13070516	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	WSB/EiJ
rs31223552					SNP	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49715409	NES13070516	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152062707 () rs orientation: forward

Symbol	Name	Function Class
Gm53608	predicted gene, 53608	within coordinates
Rr420427	regulatory region 420427	189 bp distal