rs31224643 SNP Detail

Summary

• ID
  rs31224643
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180469854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCTACTCT GCGACCTAAG GACAAGGGAA CAATTTTGTA
  ATTTTCATAT TGCACACATT ATTAAAAGGC ATTTTAGTTA CAAAATGGTC TTGAAGCAAC
  R
  CGTACTCTGT GGTGTGTATT TGTAGCCCTT GGTCAACGAA AGGTTCGCAG GTGTGGTGGC
  GCACATCTTT AATCTCAGCA CTCGGTAGGA AGAGGCAGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45009199	mCV22719631	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					G
ss60350687	NES15848755	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	A	A	A	A	A	A	G
ss146384505	ENSMUSSNP1495719	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31224643					SNP	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60350687	NES15848755	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180469854 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1114	CpG island 1114	189 bp distal
Lin9	lin-9 DREAM MuvB core complex component	within coordinates
Rr29091	regulatory region 29091	within coordinates
Tssr10481	transcription start site region 10481	1583 bp downstream
Tssr10482	transcription start site region 10482	915 bp downstream