rs31225098 SNP Detail

Summary

• ID
  rs31225098
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146468776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTACCACTG GGATCTTAGA
  ACCCACAGCT GGGGTGGGTA TAGCTTTAAT CTCTTCTTTA AAAATGGTTT CCATGAAAAG
  ATTTAGCTCT TGTCTATACT TTCTATTCTA CAACCTTTCA CTCATGTTTG TTATTCACCC
  CTCCCACACC CCAAGTTCTG ACTTATCTGT GCTGGATCTT CACCAACTGA TCTGCTTACA
  Y
  AGTTCTTTTC CTAAACACTT CACAAGCTAT CCTAAAAAAT GAGCTCAAAA TCCATTTTAG
  CTACACTATA AATTTCAATA TGTAGTTGAA TTTTAATTCA TCAAAGTTAA TTATTGGCTC
  ATGATTTACT GGTATTTTCT AAGTCCATAA AGTGTGATAG TTTGTATATG CTTGGCCCAG
  GGAGTAGCAC TATTAGAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47030588	NES10853010	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31225098					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47030588	NES10853010	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146468776 () rs orientation: forward

Symbol	Name	Function Class
Gm40170	predicted gene, 40170	266 bp upstream
Prkacb	protein kinase, cAMP dependent, catalytic, beta	Intron
Rr587078	regulatory region 587078	1421 bp distal
Rr587079	regulatory region 587079	within coordinates
Rr587080	regulatory region 587080	1733 bp proximal