rs31225140 SNP Detail

Summary

• ID
  rs31225140
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:38105994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTC CACCCCTGGT GGCACTTTCA
  W
  ATCTATATAC GTCTGAGCTC ACGTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45008950	mCV27587534	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	T
ss146361566	ENSMUSSNP6947986	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		T
ss325801284	CHEV_19_38192036	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31225140					SNP	A	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:38105994 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10802	CpG island 10802	1678 bp proximal
Rbp4	retinol binding protein 4, plasma	Intron
Tssr156244	transcription start site region 156244	784 bp downstream
Tssr156245	transcription start site region 156245	769 bp upstream
Tssr159111	transcription start site region 159111	745 bp upstream
Tssr159112	transcription start site region 159112	695 bp upstream
Tssr159113	transcription start site region 159113	630 bp upstream
Tssr159114	transcription start site region 159114	761 bp downstream
Tssr159115	transcription start site region 159115	800 bp downstream
Tssr159116	transcription start site region 159116	836 bp downstream
Tssr159117	transcription start site region 159117	934 bp downstream