rs31225401 SNP Detail

Summary

• ID
  rs31225401
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28390960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAAA TTCCTCTTGC TTTTTGCATC
  R
  ATCCCAGCTC CACGTGGTTC ACTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss46009378	mCV24575546	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	G
ss148635360	ENSMUSSNP4152704	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A				G
ss322125994	CHEV_7_29476554	CHEVERUD	SCREENING_POP	f	SNP						A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs31225401					SNP	A	A	A	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28390960 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18715	CpG island 18715	1524 bp proximal
Fbxo27	F-box protein 27	1314 bp upstream
Rr644337	regulatory region 644337	1132 bp proximal
Rr644338	regulatory region 644338	1994 bp proximal
Tssr65494	transcription start site region 65494	1281 bp upstream
Tssr65495	transcription start site region 65495	1320 bp upstream
Tssr65496	transcription start site region 65496	1468 bp upstream
Tssr65497	transcription start site region 65497	1477 bp upstream
Tssr65498	transcription start site region 65498	1497 bp upstream