rs31225682 SNP Detail

Summary

• ID
  rs31225682
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107353710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGATGTGA TAGAGTTACC
  TGGCCTAAGA CAGTGGCTCT GGCATTGGCC ACTCAAAGTC CCAGTGTGGC CAGTTAAACG
  GGACAAGGGC CTCCATGCTG TGCATGTCTA GAAGGCTACC TACGGCCCTC TGGATTTGTT
  CATAAGGATC TGCTCTGAGC TCTGACTGGA CCTCAAAACA CATCTTAGAT TCCTATCAGG
  Y
  TCAGGAAGGG GCACCATTGT AGTAGTGCAA ACGGACGGAA GCTTCTCTAC CAAGGCCTTC
  ATCAAGGAAG ACCCAGACCC TAGTTAATCC CAGAGAGCAA CTAACCCCAA CACAGGCAAG
  GTCACAGGTA AGTGTCAATT CAGGCCCCTC TCTGGAGAAC TAGTCCCACT TTGAGAGTTT
  AACCAGGAGC TGCTGCCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45511097	mCV24801928	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss135584092	ENSMUSSNP6931329	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31225682					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107353710 () rs orientation: forward

Symbol	Name	Function Class
Kcnc4	potassium voltage gated channel, Shaw-related subfamily, member 4	Intron
Rr582975	regulatory region 582975	506 bp proximal